rs247840915 SNP Detail

Summary

• ID
  rs247840915
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115215216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGACTGGG TATGTCTGAG
  ACCTAACAGT AGAAAAGTGG GCCTGCCCAT TCTGGATTCT GAAGAAGAAC ACAGGTAAAG
  CAGCTGCCCA TTCAGATTTG AGGTAAACTT AGGTAGATCC ACAACAGAGA GACATGGGTT
  GAACATGTTG TGGAGATGCA TACCCAGGCA GGTAATGCAT CATAGAGATG CACACACAAG
  M
  AGGTGGTGAC AGAAGGAACA GCAGCAGGAC TCCAGGGCAG GTGCCAACAG GGAACTCGAA
  CGATTCTCAT AACTGGAATA AAGGGTTGGG ATTTGCTGTC AGGGATGCAG CTGGGCTTCA
  GTGTTCAACA GGAAAGACCT GATTAGGGGT ATTGAGGCCT CATATCAGGT CAGAATACCC
  TAAGCAGATG TTATACCATC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321915619	CHEV_6_115188273	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247840915					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115215216 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr636939	regulatory region 636939			190 bp proximal
Syn2	synapsin II			Intron
				Noncoding-Transcript-Variant
Tssr58295	transcription start site region 58295			712 bp upstream