rs247834719 SNP Detail

Summary

• ID
  rs247834719
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14939485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATTGAGA TGAACAAGTC
  CTAAATAGGT ACATAAGATA CAAGAATAAC AACCAACACA AGCAAAATTA ACCTAAAAAA
  TTAGCTGCAT AGTCCAATAA CACATTAGCT GCATTTACTG AAAATTAGTT CTAGATATTC
  TTCAATTTAA GAATGAACTC TGGGCACGTA TAGTATATAA TTTAGCATAA AATATAAAAT
  K
  ATTAATAATA AACAAGAACT CTATATGCCA GATTTTGTTC ACATTTAATG TATGAAAACT
  TAATGAATTT TAATAGATGA ATCCCTGGGA GTGAGACTTA AATTGTAAGA TCTAACCATG
  TTTACATGTT ATTTTCATTT TGGGCACTAG ATGGCGATAA AATCTCTGTT GCAAATTAAT
  AGCTCTTAAA GCCACCCTAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357060653	MGP_WTSI_3_14874425	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247834719					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357060653	MGP_WTSI_3_14874425	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14939485 () rs orientation: forward

Symbol	Name	Function Class
Rr374551	regulatory region 374551	1259 bp upstream
Rr397608	regulatory region 397608	within coordinates
Rr573714	regulatory region 573714	44 bp proximal
Rr573715	regulatory region 573715	140 bp proximal
Rr573716	regulatory region 573716	683 bp proximal
Tssr28465	transcription start site region 28465	1947 bp downstream
Tssr32654	transcription start site region 32654	1888 bp upstream