rs247807854 SNP Detail

Summary

• ID
  rs247807854
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:55017722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCTCCTAC TACCTCTCCT CCCTGTTGCT
  GAAGCTAGGT TAGGGATGAG AATGGCTGCA Agtgtgtgtg tgtgtgtgtg tgtgtgtgtg
  tatgtgtgag tgtatgtgag tatgtgtgtg tgtgtgagag agagagagag agagagagag
  W
  gtgtgtgtgt gagagtgtat gtgattgtgt gtgtgtatgt gattgtgtgt gtgagtgtgt
  atgtgtgagt gtatgtgagt atgtgtgtgt gtgagtgtat gtgattgtgt gtgtgtgagt
  gtgtatgtgt gagtgtatgt gagtatgtgt                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320774359	CHEV_3_54914223	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247807854					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55017722 () rs orientation: forward

Symbol	Name	Function Class
Rr374991	regulatory region 374991	831 bp downstream
Rr576901	regulatory region 576901	255 bp proximal
Rr576902	regulatory region 576902	1317 bp proximal
Rr576903	regulatory region 576903	1706 bp proximal
Spart	spartin	1807 bp upstream
Tssr29147	transcription start site region 29147	1779 bp upstream