rs247803887 SNP Detail

Summary

• ID
  rs247803887
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:8948075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTGAGTG TGGGAGAGGG
  TGAAGGCCAC AGGGAAAGAA CCAGAGCTGC GGTTTGAGGG GGAATGGTGG GCGCTTGGGG
  AAGCATGGAC ATATGGAGAG AATGGGTTTG GGAAAAAAAT TTAAACATAA GTAAAAAGAT
  GCAAGGGCAC AGAAAAGACT TAGGGGAGAG AAGGAGAGAG GGAAGAGCAA GAGAGAAAGA
  Y
  GAGAGAGGGA GAGATAGAAC ACAGATAGAA AATTTTATCC CCCTTTCTTG TTTTGCCCAG
  CCCTTGGAGA AGAGTCCAGA GTCCAAGGTC GCACAGTCCT CTCTGCTGCC TCGCTCGCTG
  AATGGCTGGC AGTCCGCAGC ATCCCCGCCT CTGGCCACCG CAGCCACAGG TTTACAGTTC
  CCGGCAGCAG CGCCCCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367333485	MGP_WTSI_6_8898075	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247803887					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367333485	MGP_WTSI_6_8898075	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8948075 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17155	CpG island 17155	73 bp proximal
Cpgi17156	CpG island 17156	1585 bp proximal
Nxph1	neurexophilin 1	356 bp upstream
Rr626455	regulatory region 626455	49 bp proximal
Rr626456	regulatory region 626456	554 bp proximal
Rr626457	regulatory region 626457	1111 bp proximal
Tssr54925	transcription start site region 54925	352 bp upstream
Tssr54926	transcription start site region 54926	495 bp upstream
Tssr54927	transcription start site region 54927	533 bp upstream
Tssr54928	transcription start site region 54928	840 bp upstream
Tssr54929	transcription start site region 54929	876 bp upstream
Tssr54930	transcription start site region 54930	977 bp upstream
Tssr54931	transcription start site region 54931	1595 bp upstream
Tssr54932	transcription start site region 54932	1737 bp upstream