rs247801009 SNP Detail

Summary

• ID
  rs247801009
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152515229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGA CTCCCTCCCT CCCACCCCAG
  M
  TGCCTCTGCA GCAGCTCCTC TTGCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320563044	CHEV_2_152499045	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247801009					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152515229 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
H13	histocompatibility 13			Intron
				Noncoding-Transcript-Variant
Rr567420	regulatory region 567420			1530 bp distal
Rr567421	regulatory region 567421			1479 bp distal
Rr567422	regulatory region 567422			859 bp proximal
Rr567423	regulatory region 567423			1973 bp proximal