rs247796204 SNP Detail

Summary

• ID
  rs247796204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:125196830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTCCTCA TAATATTATA
  TTATTGATAA AAAGATACGT CTGCAGTATG CTTATCTCTC TCAATTGTAA TGGGCATCAC
  TAAGTCAACA TGTCTTGACC TTCAAATGCT TCTTTGCCAT CCGGGTAAGA AGTTGCTGAA
  TGCTGCTTGA AGATTTTATA AACATAAACT TTTTCTCAAC TCACTGTGCA TGAGAATTTA
  R
  GCAATTTGCA GACAAATGTT ATGCAGACGT TAACACCAAT AATACTGGAT ACAGACATCA
  TAAAGCCAAG CTTTAATGGC TTCTCCACTA CTTCCACCCC CCTCTCTAGT CACGGGATTT
  TACTGAAATT GTCCGAATAT TACATGTATT GCTTATAACT GAAGACACAC ACACCAGATT
  AGAGAGTATT CTGCAGCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320936159	CHEV_3_125106099	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247796204					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125196830 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	895 bp upstream
Rr584608	regulatory region 584608	411 bp proximal
Rr584609	regulatory region 584609	906 bp proximal
Tssr31558	transcription start site region 31558	891 bp upstream
Tssr31559	transcription start site region 31559	1144 bp upstream