rs247783280 SNP Detail

Summary

• ID
  rs247783280
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145812219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGGAAAG AAAGAAAGAA
  AGAAAGAAAG AAAGGAAGGA AGGAGATGTA GAACTCTCAG CTCCACCTGC ACCATGCCTG
  TCTGAATGCT GCCATGCTCC CACCTGCCTT GAAGATAATG GACTGAACCT CTGAACCTAT
  AAGCCAGCCT CAATTAAATG TTCTCCTTAT AAGACTCGCT TTGGTCACGG TATCTACTCG
  Y
  AGCAGTCAAA CCCTAACTAA GACGGTGCTC ACAGTTGCAA AGCAGGCAAC AGAGTTATCT
  CCTCAGCCCT GAAGTGTCTA CTTAAAAAAT TTTAAAGTTA CATTTATTTA TTTATTTTTG
  TGTATGTTTG TGTATGTTTG TGTACGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTAGG TCAAGGGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321009518	CHEV_3_145769428	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247783280					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145812219 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnai3	dynein axonemal intermediate chain 3			Intron
				Noncoding-Transcript-Variant
Rr398111	regulatory region 398111			1527 bp upstream
Rr586924	regulatory region 586924			681 bp proximal
Rr586925	regulatory region 586925			1656 bp proximal
Tssr36027	transcription start site region 36027			1525 bp downstream
Tssr36028	transcription start site region 36028			1545 bp downstream
Tssr36029	transcription start site region 36029			1583 bp downstream