rs247762758 SNP Detail

Summary

• ID
  rs247762758
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:140457714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTACCTTGA CCTAGAATTT CCCTCCTGTC
  TTGTTCATGC CAAATTGTTC CTCATCTGCC AACACCCAAA GAAAATATTA CCTTTCTGTG
  ATATACCCCA ATTCTGTTTC CTGGGTGCCC CTAGAGATTA TTTTCTCTTT AGAAAAAAAG
  T
  ATTGCATCTT TATGGCTTTC TGCATGCATT TAACATATGT TATAAATTGA TTGGCCACTC
  TTTAATACAA AATAGTATAT TTAAAAGTCC ATTGAGCAGT TTTGGGGTCT ATATATGCTC
  AGTGAATGCA TGCAGGATTT AAGAGCTATG                                 
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320003523	CHEV_1_142426553	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247762758					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:140457714 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnt2	potassium channel, subfamily T, member 2			Intron
				Noncoding-Transcript-Variant
Rr419878	regulatory region 419878			1575 bp proximal
Rr419879	regulatory region 419879			1739 bp proximal