rs247732828 SNP Detail

Summary

• ID
  rs247732828
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141305363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTTCAGGT GACAGGGCTT
  GCAGAAGAGG TGGTCATTCA GTGGGTAGCA GCCTTGGTCG GTAGGTTCCA CAGACAGGAG
  CACGCTGCAG TCCTGGGGAT ACAGAAGCAA GTGTGGGTGT CTCCAAGCCT GGATCCCGCC
  AGCACGGAGC TTCCCCAGGG GACCTCAGCT CCCCCCACCT TCTTCATTTA AAGATAGGAT
  Y
  TTTTTGTTTT GTTTTGTTTT GTTTTTCGAG ACAGGGTTTC TCTGTGTAGC CCTGGCTGTC
  CTGGAACTCA CTCTGTAGAC CAGGCTGGCC TCGAACTCAG AAATCTGCCT GCCTCTGCCT
  CCCGAGTGCT GGGACTAAAG GCGTGTGCCA CCACTGCCCA GCCTTAAAGA TAAAAAGCTG
  GCTTCAAACT AAGTAGCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363524036	MGP_WTSI_4_141133967	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	T	C	C	T	C	C	C	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247732828					SNP	C	C	C	C	T	C	C	T	C	C	C	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363524036	MGP_WTSI_4_141133967	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141305363 () rs orientation: forward

Symbol	Name	Function Class
Fblim1	filamin binding LIM protein 1	Intron
Rr603815	regulatory region 603815	972 bp distal
Rr603816	regulatory region 603816	436 bp proximal
Tssr44332	transcription start site region 44332	1218 bp upstream