rs247631278 SNP Detail

Summary

• ID
  rs247631278
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19364552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTTAACCC AACTAAAGAG CTGAGCCAAG
  GACGTCACAG aaaaaaattt tttttttttt aatGTTCAAC AGCAACTGGT GTTGGGCCAT
  CGGAAACAAA GTCCTTTGTG AATGCTCATC AGTGGTTTCT GAACTAAAGC CGCCTTTATC
  M
  AGCGAGAAAA CTGATTGGAA ACCATCAACT TTGCACACTA GTTCCTGACA CCTAGGCCCC
  TTCCCTACAA AGCAGCAGTT CGCAGTTCGG GTGAGGACCA CAATGGGACC ACTAGGCCTA
  TTGTTCTGAG AAACTCAGCA CCCGCAGCGC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320678392	CHEV_3_19210388	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247631278					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19364552 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
3110037C07Rik	RIKEN cDNA 3110037C07 gene			494 bp upstream
Cpgi13002	CpG island 13002			56 bp proximal
Gm66414	predicted gene, 66414			1249 bp upstream
Pde7a	phosphodiesterase 7A			Intron
				Noncoding-Transcript-Variant
Rr573969	regulatory region 573969			within coordinates
Rr573970	regulatory region 573970			924 bp proximal
Rr573971	regulatory region 573971			1260 bp proximal
Tssr28510	transcription start site region 28510			304 bp upstream
Tssr28511	transcription start site region 28511			460 bp upstream
Tssr28512	transcription start site region 28512			1052 bp upstream
Tssr28513	transcription start site region 28513			1093 bp upstream
Tssr32696	transcription start site region 32696			855 bp downstream
Tssr32697	transcription start site region 32697			881 bp downstream
Tssr32698	transcription start site region 32698			945 bp downstream
Tssr32699	transcription start site region 32699			961 bp downstream
Tssr32700	transcription start site region 32700			1001 bp downstream
Tssr32701	transcription start site region 32701			1804 bp downstream