rs247612154 SNP Detail

Summary

• ID
  rs247612154
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58205945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAGCCTT GCAGGAGCTG
  AACCAGGCTA GAGAAGGGGT TGGCAGCGGT GGGCAGGAGG GGCCCCAGGC CGCTGGCCTG
  GGTGTGTGGG GGTCTTACCG CGGCTTGCTG GAAGGCGCCC TTGGTATAGG TGCCACCACC
  GCGGTAGGTG ATGGCCGGGA TCTCGCGGCT GAGTAGCGCG CACTTGTGTT GGTGCGCGCG
  R
  CTGGTGGAGA TGTAATCCAC GCGCGCCACC ACGTTGTTCT TGGATGAGAA GGTGACGATG
  GCCACACGCG TGGCCGTGGA CACCACGGGG AAGTCGGACA GCAGCTTGCG CACGAACTTG
  AGCTCGTTGA GGAAGTTGGT TTGGCCCACG CTGGACGACT CGTCCACCAG GAAGACGAGC
  TCCAGGCTGC CGCTGAGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361664232	MGP_WTSI_4_58218817	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247612154					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361664232	MGP_WTSI_4_58218817	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58205945 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14336	CpG island 14336			within coordinates
Rr592872	regulatory region 592872			641 bp proximal
Rr592873	regulatory region 592873			697 bp proximal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1			Coding-Synonymous
				Noncoding-Transcript-Variant
Tssr41870	transcription start site region 41870			378 bp downstream
Tssr41871	transcription start site region 41871			403 bp downstream
Tssr41872	transcription start site region 41872			559 bp downstream
Tssr41873	transcription start site region 41873			588 bp downstream
Tssr41874	transcription start site region 41874			613 bp downstream
Tssr41875	transcription start site region 41875			633 bp downstream
Tssr41876	transcription start site region 41876			654 bp downstream
Tssr41877	transcription start site region 41877			694 bp downstream
Tssr41878	transcription start site region 41878			725 bp downstream
Tssr41879	transcription start site region 41879			741 bp downstream
Tssr41880	transcription start site region 41880			823 bp downstream