rs247584429 SNP Detail

Summary

• ID
  rs247584429
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114816980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAGTATT AACTTTTTAA
  ATTGGTGTTT GGCAGAGCCT ACGTTCTTTT CCGTCTCCAT GCTCCAGGCA TGTATCTCTA
  TAACAGACAT AGGCAGTTGT AAGTTCTCTC CTTGTATTCT GGAAACAAAT TGGCACATTC
  CAGCACGAGA GGGTAGCACT TTGGCATAGC AGGGGTAGTT GGTGTTGCAG GCCACACACA
  R
  GCCTGGGGAG AAAACCCCGG AATGAACTTT GGAGGCTGCG GTTACCAGCT TCCCCTCTGT
  AACATGGGGA TACTGGTCAA CATGTCGGCC TGACATGCTT GCTGGAAGAC AGTCCTTACA
  GACCACGGGC TCTGCTGTCT CGGGTGCGAC TCACGTGAGA ACTGTGGAGT GTGAAGCAGC
  AACCAGCTGC CTTAGCTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321914860	CHEV_6_114790037	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247584429					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114816980 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg7	autophagy related 7			Intron
				Noncoding-Transcript-Variant
Gm67840	predicted gene, 67840			within coordinates
Rr636840	regulatory region 636840			758 bp distal
Rr636841	regulatory region 636841			260 bp proximal