rs247552616 SNP Detail

Summary

• ID
  rs247552616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32581778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAAACACA CTGTCACTGA
  GTTATTCGCC AGCCCCTAGG TACTGACCTG TCTTTGCTGT GCTTTGCATA GTATGTGCAC
  ACGTGTGAGT ACATTAGCCG CTAGAGATCA ACAGTGAGCA ACGTTCACTA TCAGTCTCCA
  CCTTATTTTG GAAACAGTCT TTCTTTTTTG TTTTTTGTTT GTCAAGACAG GGTTTCTCTG
  Y
  GTAGCACTGG CTGTCCTGGA ATTCACTCTG TAGACCAGGC TGGCCTCGAA CTCAGAAATC
  CTCCTGCCTC TGCCTCCCAA GTGCTGGGTT CAAAGGTGTG TGCCACCATG CCTGGCAAGT
  CTTTCAAAGA ACTCAGCTCA CTGATTTGCT AGCCTGGCCA GCCAGCTCCA GAGATTTCCC
  CACCCCCAGC ATTATTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357466921	MGP_WTSI_3_32426551	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247552616					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357466921	MGP_WTSI_3_32426551	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32581778 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13058	CpG island 13058	1698 bp proximal
Gm66043	predicted gene, 66043	1060 bp downstream
Mfn1	mitofusin 1	1836 bp upstream
Rr374786	regulatory region 374786	720 bp downstream
Rr397636	regulatory region 397636	1623 bp upstream
Rr574980	regulatory region 574980	66 bp distal
Rr574981	regulatory region 574981	1346 bp proximal
Rr574982	regulatory region 574982	1847 bp proximal
Rr574983	regulatory region 574983	1952 bp proximal
Tssr28756	transcription start site region 28756	1823 bp upstream
Tssr28757	transcription start site region 28757	1903 bp upstream
Tssr28758	transcription start site region 28758	1928 bp upstream
Tssr28759	transcription start site region 28759	1950 bp upstream