rs247540679 SNP Detail

Summary

• ID
  rs247540679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:186139959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGTCCAAT AGTAACAGGC AGTTAATTGT
  GACCTATGTA ATAGCAAAGA TAGGCTCGGG CAACCCGTGT AAGCCAAGTT AAAGGACTCC
  TCAATTAAAT GCTAATGGAG TCGTTATCGG ACTGAAAATA TCTCCAGGAA GAGGCGTGAA
  Y
  TCATGGAATA GTTCAAAGCA TGGGAGAACA GCAGAGTGTG ACCACAACAG GGCTGCATAG
  ATGCCAGAAG AGTGGGAGTC GGCAGCTGCT CAGGAAGCCA CAGTTATCCT GAGACCAGAG
  GACAAAGGAC TGTGGTTCCG AGGAGATGGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320182873	CHEV_1_188231641	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247540679					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:186139959 () rs orientation: forward

Symbol	Name	Function Class
Gm35341	predicted gene, 35341	58 bp upstream
Rr425482	regulatory region 425482	within coordinates
Rr425483	regulatory region 425483	55 bp proximal
Rr425484	regulatory region 425484	1202 bp proximal