rs247538786 SNP Detail

Summary

• ID
  rs247538786
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54477891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTAGAGA AAGCAGTTTT
  TTTACTGGCT TTCTCCTCGG CTTCTCTAAG CTTGCTTTCT TGTACAGCCC AGACCACTTA
  TCCAGGCAGG TGTAGCTACT CCCACAGTGG GATGTACCCT TTAATATTAA TTAGAAATCT
  AGAAAATGCC CTTTAGACAA ACCCATAGGC CAATCCGATC CAGGTAACCT CAGCTAAGGT
  Y
  CCCTCTTCCG GGACGAGTTT GAGTCACGTT GACAATAAAA AACAACAATA TGGAGCTTCC
  CTGAGAAAAT GGAAAACTTG TCTCATATGA TTTGGTAGCT ATTATGAAGC AAGTCAAACT
  CTATTTCCTC TTTAATACAT GTTTTTCTTT ATGTCTATGA CCGCTTGCCT GCCATGCATG
  TCTGTGCACC ATGTACAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320771957	CHEV_3_54374392	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247538786					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54477891 () rs orientation: forward

Symbol	Name	Function Class
Gm65161	predicted gene, 65161	251 bp upstream
Rr576809	regulatory region 576809	211 bp proximal
Tssr29130	transcription start site region 29130	553 bp downstream