rs247495370 SNP Detail

Summary

• ID
  rs247495370
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68491191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTTGGAA GCAGCCTTAG
  TCTTGGGCTT AGTGCCCCTT TCAGACTCTG AAACTTTTAC ATCTCAAAAA CAATTTGGAA
  AAAAGAAATG AAGTGCGTCT CGTTGGTCAC GGGGGAAAAA GAAAAATGGC AAACATGTGT
  CTTACGGGTC ACCTTAAATG ATAGTTTTCA TTCGGGGCAC CCGACTCAGC TCACAGTGAG
  M
  TCTCTCGGGC TGCAAGTTTT TGTGTCTATT TTTATCCCCC AGTCTACTGG CTTCAGAGTG
  CCTCACCAAA CTCCAGTTCA CACTGGGCCC TGAACTGGGG TGGGGTCAGC TGGCTGAAGC
  TTACTATCCC CCCCCCCCCC GCCCTTTCCC TTTTTGGGAG CAGGAAAGGT GCTGCGGACA
  AGAATCTGGG CCAGATCATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358304128	MGP_WTSI_3_68387780	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247495370					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358304128	MGP_WTSI_3_68387780	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68491191 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr578030	regulatory region 578030	1889 bp distal
Rr578032	regulatory region 578032	1170 bp distal
Rr578033	regulatory region 578033	within coordinates
Rr578034	regulatory region 578034	1184 bp proximal
Rr578035	regulatory region 578035	1485 bp proximal
Schip1	schwannomin interacting protein 1	Intron
Tssr899	transcription start site region 899	274 bp upstream
Tssr29468	transcription start site region 29468	245 bp upstream
Tssr29469	transcription start site region 29469	296 bp upstream
Tssr29470	transcription start site region 29470	326 bp upstream
Tssr29471	transcription start site region 29471	354 bp upstream
Tssr29472	transcription start site region 29472	452 bp upstream
Tssr29473	transcription start site region 29473	478 bp upstream