rs247487592 SNP Detail

Summary

• ID
  rs247487592
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76237056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAATGGTC ATTTCAGTAA
  CAAGCAAAAT CATTTTAATT TTATTATATT ATATTCATCA TAAACATTTC TTCAATAAAA
  AGACAAATAT TTAAATGTAT TTAATAGATT TGTTATCTAT TCATAAACAC AAACACACAG
  AGGGGGTACT TTGGATTATT ATATCTGCTG TAAATTAATA TATTATGTAT GACTTTATTA
  Y
  ACTGAGCATA TAAGCACTTG CATATTTTAG TGGCAGACTA AATAATAGTA GCTATTATAA
  ATGATTGCCA TAATACTATT CTGTGATTCT CATAGAAACC AATCACAAAT TATAGCATGA
  ATCTATAGCT TGTATTATAA AACAGATCTA AATTGAATAT CTTCTGTAGT AACACAGTGA
  ACTTCACTCA TAATTCTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321170482	CHEV_4_75964723	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247487592					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76237056 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594082	regulatory region 594082			614 bp distal
Rr594083	regulatory region 594083			773 bp distal
Rr594084	regulatory region 594084			1089 bp proximal