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rs247479915 SNP Detail
Summary
  • ID
    rs247479915
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:82937228 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATGGTGCAGC ACTAGTTGGC
AGGTGAGGGA TTCTGGTAAC ACCCAAAAAG CTTAGAAAGG ATTTCAAAGT TCCAGGTAGA
AAGAAAAACT CCTCCTCAAA CGATATAAGC AATAATACAT TCTGTTACCA TAAATGAAGT
TACAATCAAG TAATCAGATG TGATTAAACT GTTTACCTCC TAGCCTCCAT TTTCAAACCC
Y
CAAGCCATTT CTGGATTTAT TCGGATTCCT TGTCACGTTA GGACAGTGTG ACTAATACCA
GTGGATGACT CTCCTGTGGA ACAATCTGAT TAAACTGAAA ACTTGCAGAT TATACATCCA
GAGAAAAAAC CATAATAGAG TAAAGAATAA AGTGTAGAAA TACTTATAAG CAATTTCCTT
TTTCTTTTTT TATTTATTTG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358676673 MGP_WTSI_3_82833843 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs247479915 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss358676673 MGP_WTSI_3_82833843 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:82937228 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Fga fibrinogen alpha chain Intron
Rr375250 regulatory region 375250 within coordinates
Tssr917 transcription start site region 917 1777 bp upstream
Tssr29661 transcription start site region 29661 1373 bp downstream
Tssr29662 transcription start site region 29662 1324 bp downstream
Tssr29663 transcription start site region 29663 1307 bp downstream
Tssr29664 transcription start site region 29664 824 bp downstream
Tssr29665 transcription start site region 29665 785 bp downstream
Tssr29666 transcription start site region 29666 749 bp downstream
Tssr29667 transcription start site region 29667 706 bp downstream
Tssr29668 transcription start site region 29668 277 bp upstream
Tssr29669 transcription start site region 29669 321 bp upstream
Tssr29670 transcription start site region 29670 365 bp upstream
Tssr29671 transcription start site region 29671 909 bp upstream
Tssr29672 transcription start site region 29672 1012 bp upstream
Tssr29673 transcription start site region 29673 1040 bp upstream
Tssr29674 transcription start site region 29674 1089 bp upstream
Tssr29675 transcription start site region 29675 1099 bp upstream
Tssr29676 transcription start site region 29676 1109 bp upstream
Tssr29677 transcription start site region 29677 1126 bp upstream
Tssr29678 transcription start site region 29678 1205 bp upstream
Tssr29679 transcription start site region 29679 1249 bp upstream
Tssr29680 transcription start site region 29680 1272 bp upstream
Tssr29681 transcription start site region 29681 1374 bp upstream
Tssr29682 transcription start site region 29682 1397 bp upstream
Tssr29683 transcription start site region 29683 1440 bp upstream
Tssr29684 transcription start site region 29684 1465 bp upstream
Tssr29685 transcription start site region 29685 1506 bp upstream
Tssr29686 transcription start site region 29686 1572 bp upstream
Tssr29687 transcription start site region 29687 1670 bp upstream
Tssr29688 transcription start site region 29688 1694 bp upstream
Tssr29689 transcription start site region 29689 1720 bp upstream
Tssr29690 transcription start site region 29690 1750 bp upstream
Tssr29691 transcription start site region 29691 1796 bp upstream
Tssr29692 transcription start site region 29692 1812 bp upstream
Tssr29693 transcription start site region 29693 1843 bp upstream
Tssr29694 transcription start site region 29694 1876 bp upstream
Tssr29695 transcription start site region 29695 1902 bp upstream
Tssr29696 transcription start site region 29696 1915 bp upstream
Tssr29697 transcription start site region 29697 1939 bp upstream
Tssr33800 transcription start site region 33800 1181 bp downstream
Tssr33801 transcription start site region 33801 1526 bp downstream
Tssr33802 transcription start site region 33802 1662 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory