rs247467111 SNP Detail

Summary

• ID
  rs247467111
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152057576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTCTCCC ATAGTTGTTA
  TGATTAGTTC AACTAGATAA ACTAAAACTG ACCATGACGT TCCACTTACT GGGCAGATTT
  TTAAGAAATT TCTTTTTAAG ATTATCATAA ATTATATCAT TTTCCCTTTC CCTTTCCTCC
  CACCAAACCT TCCTATATAG CCTTCCTTGA TCTCTTAAAT TTCCTGCCTC CCCCCCCCCC
  Y
  CTCTCTCTCT CTCAAGTCAG GGTTTCTCTG TGTAGCCCTG GCTGTCCTGG AACTCGCTCT
  GTAGACCAGG CTGGCCTCGA ACTCACAGAT TCACCAGCTT CTGCCTCTGC AGAGATTGAA
  GGCGAGCACT ACCATACCTG GCTTCATGAG CAGGTTTTTC ATTAATTGTT TTTACATGCA
  TGCATGCATA CATACATATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss360264656	MGP_WTSI_3_152014903	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs247467111					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360264656	MGP_WTSI_3_152014903	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152057576 () rs orientation: forward

Symbol	Name	Function Class
Rr587536	regulatory region 587536	625 bp distal
Rr587537	regulatory region 587537	within coordinates
Tssr32408	transcription start site region 32408	1927 bp downstream
Usp33	ubiquitin specific peptidase 33	Intron