rs247423844 SNP Detail

Summary

• ID
  rs247423844
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152635227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGAGGCT CAAAAGAGGG
  CGGGTGGCCT CGGGGCATGA TGATGGTGAC ATAATCGGCC AATTAAAACC TTGAGACAAA
  GTCTGAGCCA TACAGGTGCA GAGCCCAGGA TGCTGTGAGC TAAGACTAGT CAGCCGGACA
  ATAGTATCAA AGAGCTAACT TCCCAGGTGG GTAACATGCT TGCTTTGAAA GGACCAGGAC
  G
  CGTGCTAGAT CCCAGAACAG ATGTAAAAAG TAGGGAGAGG CAATGTGCAC TTGCAATCCA
  GCACACAGGG AGACGGAGAC AGGCGGGTCG CTGGGGCTGA CTAACAAACC TCTTCAAGGC
  CAGTGAGAGG ACTTGTTACA AAGAAACAAA CAAAAAGATG GGTGTTATCT GAGGTATGAC
  TGCTAAGGTT GTCCTCTGAT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321029249	CHEV_3_152592554	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247423844					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152635227 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Gm46830	predicted gene, 46830	within coordinates
Gm66995	predicted gene, 66995	within coordinates
Rr587627	regulatory region 587627	686 bp distal
Rr587628	regulatory region 587628	within coordinates
Rr587629	regulatory region 587629	691 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron
Tssr32427	transcription start site region 32427	690 bp downstream
Tssr32428	transcription start site region 32428	454 bp upstream