rs247298854 SNP Detail

Summary

• ID
  rs247298854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109766000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAAATGT GCCGTTTTTA
  TGGCACAGAA AAAGAGAGAA CACAGGTTGT TCTAGTCATG AAGGAAAGGT ACTGAATCCC
  GTTTATAAGT TTACCACGAG AACTTTGTTT CGTTTTTTAC TTTAAATTTT GTTTATTTTA
  TTATTTTATT TATTTATTTA TTTATTTATT TATTTTGGTT TTTTGAGACA GGGTTTCTCT
  R
  TAAGCCCTGG CTGTCCTGGA ACTCACTTTG TAGCCCAGGC TGGCCTTGAA CTCAGAAATC
  CGCCTGCCTC TGCCTCCCGA GTGCTGGGAT TAAAGGCGTG CGCCACCATG CCCGGCTCTT
  TTTATTTAAT TAAATTAATT AATTAATTAA TTAATTAATT AATTAATTAA TTTAGGGTGT
  TTTGAGACAG GGTTTCTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss372700322	MGP_WTSI_7_117310307	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs247298854					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372700322	MGP_WTSI_7_117310307	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109766000 () rs orientation: forward

Symbol	Name	Function Class
Gm72506	predicted gene, 72506	within coordinates
Gm72511	predicted gene, 72511	1858 bp upstream
Rr1426	regulatory region 1426	272 bp downstream
Rr653201	regulatory region 653201	1869 bp distal
Rr653203	regulatory region 653203	1854 bp distal
Rr653204	regulatory region 653204	1798 bp distal
Rr653205	regulatory region 653205	1799 bp distal
Rr653206	regulatory region 653206	1228 bp distal
Rr653207	regulatory region 653207	311 bp distal
Rr653208	regulatory region 653208	90 bp distal
Tssr2367	transcription start site region 2367	1867 bp upstream
Tssr2368	transcription start site region 2368	534 bp upstream
Tssr74253	transcription start site region 74253	1918 bp upstream
Tssr74254	transcription start site region 74254	430 bp upstream