rs247258886 SNP Detail

Summary

• ID
  rs247258886
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7842933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCTTTTA AAAAAAAGAA
  CACCAAAAAC CTAAGGAAGG GAGTGGTCAT TTGACCAATA TTGTTTCTAT TTCCATTCCT
  TTTTGCCTGT GATTTTGCTA AATATGACTA TGCCTAAACT TAGAACTTAT CCTTGGGGGT
  GTTTCTTATC TTTGTTAAAA TGATGTTATT CTTTAGTCAT TATAACTCTT AATAGAGTTC
  R
  GGACTCATAG AATTCTGAGG TTGGTTTTAT ATTTAGAACA CTTGGACTTC CAGGCAGTTT
  TCTTTTACAT TTATGCATGG CAATTTTTTT TTTTTTGTCT GTGTGTGGTG GAGTTAAGCC
  TGAGCAGGAG CTGAGAAAAA GAGAAGGATG GAGCTAAGGA TGTCTGGGAG AGAAGTTGGA
  GGGCCATGGA CCAGAGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367306386	MGP_WTSI_6_7792933	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247258886					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367306386	MGP_WTSI_6_7792933	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7842933 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17149	CpG island 17149	1543 bp proximal
Rr399558	regulatory region 399558	1491 bp upstream
Rr626324	regulatory region 626324	1419 bp proximal
Rr626325	regulatory region 626325	1623 bp proximal
Rr626326	regulatory region 626326	1920 bp proximal
Tssr54889	transcription start site region 54889	1700 bp upstream
Tssr54890	transcription start site region 54890	1833 bp upstream
Tssr54891	transcription start site region 54891	1873 bp upstream