rs247249523 SNP Detail

Summary

• ID
  rs247249523
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60379274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAGCAAA CTCCCTGGTT
  TTCTGTCTTA CTATCTTTAT GGCTCTTTGG AAAATATGTC TGAGCCTTGG GTGCAGAGTT
  ATATTGTAGA TTTAGCCATT GTAACCATAT ACAAAGAACT ACAGGCAACT AATGTAGCTT
  GACAGCTTGA GAAATCAAAT ACCGAATGGC CAGCCCTGAA AACATACAAA TGATGTTATG
  M
  AGATAATACC TAAGTATTTA TAGATATATG TTAAATACAT GTATGTGGGT GTGACAATTA
  ACAGAGAGAC CATAAACTTG ACACAGAGCA AGGAAGGGGT ATGGGAGGGT CTAGAGGGAG
  CAAACAGAAG AGGGGAATGA TGTAACTATT CTCTACAAAG AAAGGAAATA AGTTTCAGAT
  TTTTTTAAAA AAGAAATAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358136972	MGP_WTSI_3_60275775	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247249523					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358136972	MGP_WTSI_3_60275775	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60379274 () rs orientation: forward

Symbol	Name	Function Class
Mbnl1	muscleblind like splicing regulator 1	977 bp upstream
Rr397689	regulatory region 397689	295 bp upstream
Rr577397	regulatory region 577397	736 bp proximal
Rr577398	regulatory region 577398	1237 bp proximal
Rr577399	regulatory region 577399	1746 bp proximal
Tssr29248	transcription start site region 29248	345 bp upstream
Tssr29249	transcription start site region 29249	367 bp upstream
Tssr29250	transcription start site region 29250	741 bp upstream
Tssr29251	transcription start site region 29251	778 bp upstream
Tssr29252	transcription start site region 29252	827 bp upstream
Tssr29253	transcription start site region 29253	878 bp upstream
Tssr29254	transcription start site region 29254	930 bp upstream
Tssr29255	transcription start site region 29255	939 bp upstream
Tssr29256	transcription start site region 29256	954 bp upstream
Tssr29257	transcription start site region 29257	969 bp upstream
Tssr29258	transcription start site region 29258	1209 bp upstream
Tssr29259	transcription start site region 29259	1245 bp upstream