rs247244521 SNP Detail

Summary

• ID
  rs247244521
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:75771668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTGCATTG CTTGAGTTCT
  GACAGAAAGA CCTGCCCTCG CTGCCCCGTG CCTAACTAAG CCTTGGGCTT TCCAAAGCTG
  ACCGGTGTCC CCAGGACTCG CGTAGCTCCG CCCTGCACTG GGATAGCTCC GGAGCCCTAA
  ATCCAGGAGG TTAATGGAAG GGCGAGCTTT GGCCCCTCCC ATTTGGAGGG CGTGGATCAG
  W
  GGCCCCGCCC CAGATCCCGC CCATTTCACC TGACTCTAAG GACGCTGCCG TGTTAGTTGC
  CCGGCACTGA GCGAGCGGCT GCTACGGTCC ACGCTTCTTA CTCAGCTCCA ACTTGATCCC
  ACCGCAGTCA TGCCTCGGGG AAGCCGCAGT GCGGCTGCCA GGCCGGTCAG GTGAGAGAGA
  GAGCGACAGG GACCCCGTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380934115	MGP_WTSI_10_75398579	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247244521					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380934115	MGP_WTSI_10_75398579	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75771668 () rs orientation: forward

Symbol	Name	Function Class
Chchd10	coiled-coil-helix-coiled-coil-helix domain containing 10	mRNA-UTR
Gm867	predicted gene 867	1889 bp downstream
Rr384937	regulatory region 384937	1436 bp upstream
Rr401998	regulatory region 401998	within coordinates
Rr434184	regulatory region 434184	251 bp distal
Rr434185	regulatory region 434185	1009 bp proximal
Tssr94149	transcription start site region 94149	22 bp upstream
Tssr94150	transcription start site region 94150	44 bp upstream
Tssr94151	transcription start site region 94151	392 bp upstream
Tssr94152	transcription start site region 94152	440 bp upstream
Tssr94153	transcription start site region 94153	471 bp upstream
Tssr94154	transcription start site region 94154	490 bp upstream
Tssr94155	transcription start site region 94155	570 bp upstream
Tssr94156	transcription start site region 94156	1328 bp upstream
Tssr94157	transcription start site region 94157	1342 bp upstream
Tssr94158	transcription start site region 94158	1463 bp upstream