rs247238161 SNP Detail

Summary

• ID
  rs247238161
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:75770292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTTACCC CCCAACCTGC
  CCCATTACCC CACATTACCA CACTTAGTAG AGGATCTGGA AGGTGGGCTA GCCACGGAGG
  CCCACAGAAG GGGTTGAAGC TGGAAGAATG TTACCACTTG CCTACTGGAT ACAAGGTAAG
  CAGAGGCCAA ATAGATAAGC CAGTGGGGTC TGCTCAAGCC TGCCCCCCCC TTTTTTTTTT
  W
  AATTTTCTAC AACAGCACAT TTTTTTAAAA GATTTATTTA TTTATTATAT GTAAGTACAC
  TGTAGCTGTC TTCAGACACT CAAGAAGAGG GCATCAGATT TCGTTATGGA TGGTTGTGAG
  CCACCATGTG GTTGCTGGGA TTTGAACTCG GGACCTTCAG AAGAGCAGTC GGCACTCTTA
  ACCACTGAGC CATCTCGCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380934092	MGP_WTSI_10_75397203	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247238161					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380934092	MGP_WTSI_10_75397203	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75770292 () rs orientation: forward

Symbol	Name	Function Class
Chchd10	coiled-coil-helix-coiled-coil-helix domain containing 10	Intron
Cpgi1736	CpG island 1736	1581 bp distal
Cpgi1737	CpG island 1737	1189 bp proximal
Mmp11	matrix metallopeptidase 11	Intron
Rr401998	regulatory region 401998	1286 bp upstream
Rr434182	regulatory region 434182	1318 bp distal
Rr434183	regulatory region 434183	1091 bp distal
Rr434184	regulatory region 434184	953 bp proximal
Tssr94147	transcription start site region 94147	1105 bp downstream
Tssr94148	transcription start site region 94148	1081 bp downstream
Tssr94149	transcription start site region 94149	1398 bp upstream
Tssr94150	transcription start site region 94150	1420 bp upstream
Tssr94151	transcription start site region 94151	1768 bp upstream
Tssr94152	transcription start site region 94152	1816 bp upstream
Tssr94153	transcription start site region 94153	1847 bp upstream
Tssr94154	transcription start site region 94154	1866 bp upstream
Tssr94155	transcription start site region 94155	1946 bp upstream
Tssr98153	transcription start site region 98153	1974 bp upstream