rs247212074 SNP Detail

Summary

• ID
  rs247212074
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68490410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAA TTGAATTTAA AAAACATTTA
  Y
  GGAGGTAAAC AGCTAAAGGT GAGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320791714	CHEV_3_68386999	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247212074					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68490410 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr578030	regulatory region 578030	1108 bp distal
Rr578031	regulatory region 578031	1294 bp distal
Rr578032	regulatory region 578032	389 bp distal
Rr578033	regulatory region 578033	612 bp proximal
Rr578034	regulatory region 578034	1965 bp proximal
Schip1	schwannomin interacting protein 1	Intron
Tssr899	transcription start site region 899	1055 bp upstream
Tssr29468	transcription start site region 29468	1026 bp upstream
Tssr29469	transcription start site region 29469	1077 bp upstream
Tssr29470	transcription start site region 29470	1107 bp upstream
Tssr29471	transcription start site region 29471	1135 bp upstream
Tssr29472	transcription start site region 29472	1233 bp upstream
Tssr29473	transcription start site region 29473	1259 bp upstream