rs247163067 SNP Detail

Summary

• ID
  rs247163067
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62421191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCATCTT CCTGCCTCAG
  CCTCCCAAGT GCTGGGATAA TGGGCGTGCC ACCGCCGTGT CTGTCTAACC TAGTTTCTCT
  CTGTAAAAAA ACAAAAAACA AAAAACAAAC AAACATTTAA AGGAAAGAAG AGTTTCCCTT
  TAAATGCGGT TTTCATAACT GAAATACACG TTTATATTCA AAAGTACCGT TGAAAGCAAA
  M
  AAGCAAAGCT TTCCTCTCAA CCTAGTTGAT TCGTGAGGTG CCAAGTAAGC ACCTGTATTC
  TGTGTCTGAC GCGTGGATAG AGCAGGAAAA TGTCAGTTTC CTGCCTACGC GAACATGGGA
  GGATCAGGCA AAAACCAAGT TCATAACGGA AATGAGCTGT AAGTGCTGCC AAGGAATTGG
  CTGGGGGGCA GGGGCAGGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss361714299	MGP_WTSI_4_62163988	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs247163067					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361714299	MGP_WTSI_4_62163988	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62421191 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14361	CpG island 14361			444 bp distal
Hdhd3	haloacid dehalogenase-like hydrolase domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr593324	regulatory region 593324			1732 bp distal
Rr593325	regulatory region 593325			689 bp distal
Rr593326	regulatory region 593326			188 bp distal
Tssr42008	transcription start site region 42008			772 bp upstream
Tssr42009	transcription start site region 42009			728 bp upstream
Tssr42010	transcription start site region 42010			694 bp upstream