rs247163016 SNP Detail

Summary

• ID
  rs247163016
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:34725209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCAGTCAG TCCTAAAGAC
  TTGAGTTCAA CTCGCCCCAC AAAGCCCCAT GACTTTGGGC AGTCAACTTA ACTCTGAGTC
  TCAGTTTCTC TATAAAATAA AAGAACATTT GCTTCTCTCT CTTGCTGAGA GGAGAAAATG
  GGTTCATTAA CAGGTTCATT AACAGGCTCA TTAACAGTGT GTGTGTTTGG GGCTGGGGGG
  K
  GGGGGGTAAA TGGTGTTTGC CCCGCCCTCC AGGAGGCACT GTGTGCTGCA GGTTCCAGGC
  TAGCCATCCC CTCAGGTATC CTTTTAGGCA AAAGCAAAGT CTCTGAACTG ACGAGGTCAG
  ACTCAAGCTC ATAGAAGTTA TCGCAATTCA GAATGGTCCT TCAGACGGAC GCAAGCTAGG
  AACTGGTTAG AAATGCCAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402329723	MGP_WTSI_19_34822299	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247163016					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402329723	MGP_WTSI_19_34822299	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34725209 () rs orientation: forward

Symbol	Name	Function Class
Rr546785	regulatory region 546785	531 bp distal
Rr546786	regulatory region 546786	92 bp distal
Rr546787	regulatory region 546787	263 bp proximal
Slc16a12	solute carrier family 16 (monocarboxylic acid transporters), member 12	mRNA-UTR
Tssr156164	transcription start site region 156164	1496 bp downstream
Tssr159005	transcription start site region 159005	694 bp upstream
Tssr159006	transcription start site region 159006	623 bp upstream
Tssr159007	transcription start site region 159007	590 bp upstream
Tssr159008	transcription start site region 159008	558 bp upstream
Tssr159009	transcription start site region 159009	496 bp upstream
Tssr159010	transcription start site region 159010	474 bp upstream
Tssr159011	transcription start site region 159011	360 bp upstream
Tssr159012	transcription start site region 159012	341 bp upstream
Tssr159013	transcription start site region 159013	315 bp upstream