rs247013896 SNP Detail

Summary

• ID
  rs247013896
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:81845794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACCATTCCC CTACTCTCTG TCCTAATACA
  CGGCTTTTGA TGCAATGAGA GGAGACATAT GTAGACTCAC AGCCGCCAAG GCTTGGAGAC
  ATTTGCTTCA ATAGTCAGAA TTGAAGGCCA CAAGTACAGT GACTGGAAAG AACAGAAAAA
  W
  CCCAGAAATG AACAACAGTT TCAAACAATG TGAGCCTCAT GTTAGGTGAA AACTAGCATT
  GAGTTCTAAT AGAGGAATGC ATGCTCTGAG GTAGCCTGTT CTGTTGGCAT TGCTGCATTA
  TGAGTACAAT AGCAGGTTGT TTGCTATAGC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320817227	CHEV_3_81742409	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247013896					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:81845794 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ctso	cathepsin O			Intron
				Noncoding-Transcript-Variant
Rr578733	regulatory region 578733			496 bp proximal