rs247008255 SNP Detail

Summary

• ID
  rs247008255
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101870844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGGTGTC ATGACTTCTG
  CTCTTCTGCC CTGCTCAGTC TTGAGAAGGA GGCAGCCATC TGATCTCAAC ACTGTACACT
  GTGCAGGAAG CCGAGATGCA CAACACTTGT AGTGTAAATA GAGGCTGTCC ATTCCAAGGA
  CAAATAGTGA GCCACCGAGC TCTCTGCTTA CAGTATCTGC TGCTGCCCAA GTCCCCTGCC
  Y
  GTTTTTTGAC TTTCAAGTTG CACCACATTT ATCCCCAAGA ATAATAATTT ACTAAACATG
  CCAACCCATA TAGTAGAGGG AGATGAGCCA GTGGGGGTGG GGTGGGGTGG TGCTGCTGCC
  GCAACTAGCC CATTTCATGC TGGGGTAGAT GCCCTCTGTT CTCCTATACA TCTATATGCA
  GAAGTTCATT TTCCAACTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320433847	CHEV_2_101880656	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247008255					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101870844 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr367252	regulatory region 367252	818 bp downstream
Rr561617	regulatory region 561617	1541 bp distal
Rr561618	regulatory region 561618	860 bp distal
Rr561619	regulatory region 561619	415 bp distal
Tssr19089	transcription start site region 19089	902 bp downstream
Tssr19090	transcription start site region 19090	863 bp downstream
Tssr19091	transcription start site region 19091	840 bp downstream