rs246901089 SNP Detail

Summary

• ID
  rs246901089
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152020505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACATACAC ACACCGACAT
  ACACATGCAC CCACATACAC ACGCACCCAC ATACACACGC ACCCACATGC ACACACCCAC
  ATACACACGC ACCCACATAC ACAAGCACCC ACATACACAC GCACCCACAT ACACACACAC
  ACACATACAC ACGCACCCAC ATACACATGC ACCCACATAC ACACACACCC ACATACACAT
  G
  CACCCACATA CACACGCACC CACATACACA CACCCACATA CACAAGCACA CACATACACA
  CGCACCCACA TACACACGCA CCCACATACA CACGCACCCA CATACACACG CACCCACATA
  CACAAGCACA CACATACACA CGCACCCACA TACACACGCA CCCACATACA CACGCACCCA
  CATACACAAG CACACACATA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C3H/HeH	C3H/HeJ	C57BL/6J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	NON/ShiLtJ	PL/J	RIIIS/J	SJL/J
ss360264012	MGP_WTSI_3_151977832	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C3H/HeH	C3H/HeJ	C57BL/6J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	NON/ShiLtJ	PL/J	RIIIS/J	SJL/J
rs246901089					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360264012	MGP_WTSI_3_151977832	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152020505 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Miga1	mitoguardin 1			Intron
				Noncoding-Transcript-Variant
Rr587523	regulatory region 587523			within coordinates
Rr587524	regulatory region 587524			725 bp proximal
Rr587525	regulatory region 587525			943 bp proximal
Rr587526	regulatory region 587526			987 bp proximal
Rr587527	regulatory region 587527			1406 bp proximal
Rr587528	regulatory region 587528			1698 bp proximal