rs246883665 SNP Detail

Summary

• ID
  rs246883665
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59549775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAAGCCC GCGGGCCTTC
  CGGCTCCCGG GACTCAGGCT TAGGGCCCTG AACGGTGCTG GCTAGAAAAG CCTGGGGACC
  CCAGGGAACT TTTGAAGCAG AGCAGAGTTA CTACTGGCGG GCGACACTGC TGGCAGCACG
  GCAGGGGACC CGCGCGACGT CCACGGGGCA GGGGTGGACA GTGGTCTTTC CGGACCTGAG
  M
  GCAGCGACGG TAGCCTGTCC GCCAGACCCT GACCTCCGAG ACCTGCACTG GACGGATAGG
  TGTGGTTGGG AAAGAAATGA AGTAGATGAG ACTGCCCAGG ACTGAAGTCC ATCTTCACTT
  TCACACGGTT TTAATCTGAG TGCTTTTCTA CCCAACAATC AAATACTAAA AGAAACTTTC
  ATTGCATAGC TATTTAATGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141176	CHEV_4_59562647	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246883665					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59549775 () rs orientation: forward

Symbol	Name	Function Class
1700018M17Rik	RIKEN cDNA 1700018M17 gene	within coordinates
Cpgi14347	CpG island 14347	within coordinates
Ptbp3	polypyrimidine tract binding protein 3	487 bp upstream
Rr593081	regulatory region 593081	1758 bp distal
Rr593082	regulatory region 593082	1049 bp distal
Rr593083	regulatory region 593083	within coordinates
Rr593084	regulatory region 593084	264 bp proximal
Tssr41946	transcription start site region 41946	472 bp upstream
Tssr41947	transcription start site region 41947	450 bp upstream