rs246863854 SNP Detail

Summary

• ID
  rs246863854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13840878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCATAGGG CTAACTAATC
  TTATACTTTT TTTTTTTAAT CTTTTTTTCT TTTCTTTTTT TGAGACAAGG TTTCTCTGTG
  TAGCCCTGGC TGTCCTGGAA CTCACTTTGT AGACCAGGCT GGCCTCAAAC TCAGAAATCT
  GCCTGCCTCT GCCTCCCGAG TGCTGGGATT AAAGGCGTGC GCCACCACGC CCGGCTAACT
  R
  ATCTTATACT TTAAGAAGCA TATATTGGGG CTGATGAGAT GCCTCAGGGA GTAAGAGCAC
  TGACTGCTCT TCCGAATGTC CGAATCCCAG CAAGCAGAGT TGAGCGGGGC TAACCGGAGC
  GAGCAGAGGA TTTATAAATT CAATTCCCAA CTCACACACA CAAAATAAAA ATAATAAAAT
  AAAAATCTTA AAAAAGAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367440180	MGP_WTSI_6_13790879	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246863854					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367440180	MGP_WTSI_6_13790879	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13840878 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17167	CpG island 17167	1699 bp distal
Gpr85	G protein-coupled receptor 85	937 bp upstream
Rr626595	regulatory region 626595	1935 bp distal
Rr626596	regulatory region 626596	517 bp distal
Tssr59846	transcription start site region 59846	1669 bp upstream
Tssr59847	transcription start site region 59847	1539 bp upstream
Tssr59848	transcription start site region 59848	1441 bp upstream
Tssr59849	transcription start site region 59849	1369 bp upstream
Tssr59850	transcription start site region 59850	1345 bp upstream
Tssr59851	transcription start site region 59851	971 bp upstream
Tssr59852	transcription start site region 59852	938 bp upstream