rs246834297 SNP Detail

Summary

• ID
  rs246834297
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:63373722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGAGTGC ATTAAATGTG
  TTCCCAGTGT TGAGTGGTTA TCTCTGTGGA TCATCCATAG TCCTTACATT TCCCCAAATG
  AACCAGTTCA GTTATACTGA CTTCTTTGTG GCCCTCCTGC GCCCATGTGG GCTCCCATCT
  GCCATCTGCC TTGGAATTTG CTCCATGTGA GCCAAGTCTT CAGGCAGAAG GCCTGGATTT
  S
  CCTCTTTAAT GATAAGTGTG AGCCCAGGGG ACTCTCCTGA CATTGAAAGG GTCTAACCAC
  TCAGAAGGTT GAAGGCTCTC TCTGCTTCAG GCAAGACGGG CTTCTTACCA GGCAGGACTT
  AATATTACCA CAGGCATTTG GGGCAGTGGA AGCCATTTCT GACCGAACCT GCATTCACAC
  CAATGGCCGA GTCAACGTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391307078	MGP_WTSI_14_63755110	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246834297					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391307078	MGP_WTSI_14_63755110	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:63373722 () rs orientation: forward

Symbol	Name	Function Class
Ctsb	cathepsin B	Intron
Rr493627	regulatory region 493627	1716 bp distal
Rr493628	regulatory region 493628	935 bp proximal
Tssr126082	transcription start site region 126082	1338 bp downstream
Tssr126083	transcription start site region 126083	768 bp downstream
Tssr126084	transcription start site region 126084	730 bp downstream
Tssr126085	transcription start site region 126085	630 bp downstream
Tssr126086	transcription start site region 126086	129 bp upstream
Tssr126087	transcription start site region 126087	1754 bp upstream
Tssr129133	transcription start site region 129133	596 bp upstream
Tssr129134	transcription start site region 129134	190 bp downstream
Tssr129135	transcription start site region 129135	242 bp downstream
Tssr129136	transcription start site region 129136	1794 bp downstream