rs246828486 SNP Detail

Summary

• ID
  rs246828486
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145099427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAAGGGCTG GAGAAATAGG TCAATGGTTA AGAGAGATTA
  TTGCTTTCGA AGAGGGCCCA GGTTCAGTTC CCTGAACCTA CCCGGCAGCT CAGGATGGCC
  W
  GTAGCTTCAG CTCAGGAAAT CTCACACCCT CTTCTGATTT CTGTGGGCTC CTGCACGCAC
  ATGATGTAGA TAAAATCATG CAGGCGCGCG CACACACAC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321008147	CHEV_3_145056636	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246828486					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145099427 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
Gm35133	predicted gene, 35133			1696 bp upstream
Rr586774	regulatory region 586774			1241 bp distal
Rr586775	regulatory region 586775			1037 bp distal
Rr586776	regulatory region 586776			532 bp proximal