rs246811429 SNP Detail

Summary

• ID
  rs246811429
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149088801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGACAAGT ATGGAGGTCA
  GTTCTCCTTC CACCATCAAG TGCATTCAGG GATCAGCCTC AGATCCCGAG GCTTGGTGGT
  CCTGATGCTG CTGCACCACC CTGCCACCCA GGCATCCACA CCAACGGTGC CTGTTCTCCA
  ACATCACAGA AGCAAGGAGC TACTCCACCA TCATCATCAC CACCACCACC ATCATCACCA
  T
  CACCATCATC ATCATCACCC ACTCGTCACC ACCCTCTTCC TCCTCTTCTT TTGAGAAAGG
  GTCTTGTATA AACAGGCCTG TTTAAACATG GGGCTGGAGC CTGGACCTAA GCCTTCCCAA
  GCACTAGACA AGCACCCTAC CAACTGAGCT ACCTGCACAG TCCTTCTGGT GGGAGTCCTC
  AGGCTTCAAG CGTGGACTTT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ
ss363627797	MGP_WTSI_4_148378453	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ
rs246811429					SNP	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363627797	MGP_WTSI_4_148378453	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149088801 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42351	predicted gene, 42351			within coordinates
Pex14	peroxisomal biogenesis factor 14			Intron
				Noncoding-Transcript-Variant
Rr604816	regulatory region 604816			1312 bp distal