rs246807732 SNP Detail

Summary

• ID
  rs246807732
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54824045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAGGAAC GATGGAACGG
  GAGCCTTCCG TGCCTGGGCT TGTTTAGATG CTTTGGGGAG AAGAGAAGCT TGGTTTCTTT
  GGTGTCTTGG GTTCTTTTTT ATTCAAAGAC CCAGTTGGCT CCCTGGTCTA TATGATCTGA
  AGCACTGAGC TCTGGGACAT GTTGGTTACT TTTTGTTGAT GGATTTTCAC CCGGAGGACC
  S
  CCCCCCCCCC CCATTTTTTG GCTTAAAAGT GAACCAACAA AGCACTGGGC TGCCTAAATC
  TTCGTGACAG CTCGTTGTTC ACCAGTGCCT AGCTCCTGGA TTACACTGTT TCTGTCCACG
  TTTATTGGTT TTCCAGGTAG AGACAGGCAT GGGGCCTAAC TCTGAGACAC CGTTGTGATA
  AAAGCTATGC TGTCTCTGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	DBA/1J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	SEA/GnJ	ST/bJ	ZALENDE/EiJ
ss358019082	MGP_WTSI_3_54720546	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	C	G	G	G	G	G	G	G	C	C	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	DBA/1J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	SEA/GnJ	ST/bJ	ZALENDE/EiJ
rs246807732					SNP	G	G	G	G	G	C	G	G	G	G	G	G	G	C	C	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358019082	MGP_WTSI_3_54720546	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54824045 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13182	CpG island 13182	457 bp distal
Gm31358	predicted gene, 31358	within coordinates
Rr576863	regulatory region 576863	1604 bp distal
Rr576864	regulatory region 576864	1103 bp distal
Rr576865	regulatory region 576865	783 bp distal
Rr576866	regulatory region 576866	607 bp distal
Rr576867	regulatory region 576867	721 bp distal
Rr576868	regulatory region 576868	195 bp distal
Sertm1	serine rich and transmembrane domain containing 1	737 bp upstream
Tssr33288	transcription start site region 33288	797 bp upstream
Tssr33289	transcription start site region 33289	740 bp upstream
Tssr33290	transcription start site region 33290	603 bp upstream