rs246789420 SNP Detail

Summary

• ID
  rs246789420
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:8927590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGACAGC CAGGGCTACA
  CTGAGAAACT CTGTCACAAA ACAAAACAAA ACAAAACAAC AAAAAAGAAA AGAAAAACCT
  TAGCTTTTCC AAAGAAAAAG ATAATGAACC TTTTTCCTAA AAATGTATAA TGTTTTATTT
  GATATTTTTA TTTAATATAG TTTTTAATGA TTAGATTTTT CTTTAGGAAA TTAAATGGGA
  Y
  GACTTTAAAC AGGAAGGGAA CGAAGGTTCC TAAAGCAACC AATCTCTCTG TCTGAGATGA
  TTTTACGTAG AAACCTTTCA GCACACAGAA ACGTACGCGT TTACAGTCTG GGTGTTTAGT
  CTGGACAACC AACACTGATG CTCCTTGTAC AACCCTGAGT TATCAGCCAG CCAAGACAAA
  TTAAAAATGT GATGGCAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320648889	CHEV_3_8862530	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246789420					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8927590 () rs orientation: forward

Symbol	Name	Function Class
Mrps28	mitochondrial ribosomal protein S28	Intron
Rr573330	regulatory region 573330	411 bp proximal
Rr573331	regulatory region 573331	1798 bp proximal
Tssr32560	transcription start site region 32560	740 bp downstream