rs246774420 SNP Detail

Summary

• ID
  rs246774420
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:70297135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAAAATG CAAAACAGAA
  CATGCTGAGA TTTATACAAA ACAGGGTTAC ACACAGACAT ATGTAAAGTT TTACATAGAA
  CTGCTCTGTA CAGGCACTAA TAACACTGGT TAGATCCAGG GACCCAGGGG TCAGAGCAGA
  GCATCTTCTC AGGACGTGTA TGTCAGGGTT TTTACCATCT GAACCTGAAG CAGACACACA
  W
  ACACAATAGC TTGATGAGGA AGATAATTAA ACTACGCCAT CCAGTCAGTG AAGAGGAGAG
  GAAGTAATAC ACTGAGATGG GCAGATGAGG CTCAAACCCA TTGTGTAAGC ACCACGACAA
  CAGGCAAGTT ACGGACATTG CCCGAGCCTC AGTTTCCTCA CTATCAGACC AGGATAAGCT
  CTACTGCCTG GCACTGGCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321159439	CHEV_4_70039932	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246774420					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:70297135 () rs orientation: forward

Symbol	Name	Function Class
Cdk5rap2	CDK5 regulatory subunit associated protein 2	Intron
Rr593865	regulatory region 593865	1246 bp distal
Rr593866	regulatory region 593866	1343 bp distal
Tssr37622	transcription start site region 37622	771 bp downstream
Tssr37623	transcription start site region 37623	739 bp downstream
Tssr37624	transcription start site region 37624	682 bp downstream
Tssr37625	transcription start site region 37625	670 bp downstream
Tssr42116	transcription start site region 42116	704 bp upstream
Tssr42117	transcription start site region 42117	684 bp upstream
Tssr42118	transcription start site region 42118	636 bp upstream