rs246759158 SNP Detail

Summary

• ID
  rs246759158
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:80820710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGGTCTGT CCCCACTTGG
  CTCACAGCCC CTTATCCTCC TGGAGCGATG CTAGCTGCTA CAGCCGGGCT CCCGCGCGAC
  CCTTGTCCGC AAGGCTCTGT GGCTTTCCAG AACGGCCGGC CGCTGCAGGG CCAGGTGAGC
  CTCCCCACAG CACCCCAGGG CCCTCGGCGC CTCTGGTCCC CAAACCCCGG CCCCGGCCCC
  S
  GCGGGCATCG GACACTGCGT CTTGCACCGA GCCCGCCTCG GGCCCCAGCT CGGCCCCGCC
  GCAGTGCGCA GACCCGAAGC CCGCGCCGCA GGGAGCTCGC CGCCAGGCCT TACCGCACGC
  GCCCCTCAGC CCTCCGCCGA GGTGACGGCG GCGCAGGTGG CGGGCGCAGA GGCAGCTGCG
  ACCAGCGAGT CCCGCCGCCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320812976	CHEV_3_80717325	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246759158					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80820710 () rs orientation: forward

Symbol	Name	Function Class
Glrb	glycine receptor, beta subunit	Intron
Gm54207	predicted gene, 54207	within coordinates
Gm65109	predicted gene, 65109	within coordinates
Rr578673	regulatory region 578673	172 bp distal
Rr578674	regulatory region 578674	within coordinates
Rr578675	regulatory region 578675	115 bp proximal
Tssr33773	transcription start site region 33773	139 bp downstream