rs246756172 SNP Detail

Summary

• ID
  rs246756172
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74520746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCCGCAA GGCGGCTCGC
  CGCCTGCAAC CAAAGAAGAA GGGAGGAAGT TGTTCAAGTT TCTCATAAAA TTCTGAGTTT
  CCACGGTGGT TGTGGCAGTG GTTGTTCTTT AATGAGCTGG ACCACAACCC CAGACCATAT
  CCTCTTTATA AAACTTTCCC TCACCAGAGG AAACGGAAGA CTTAGACTCT CCCTCTTTAT
  Y
  CCCTTCTTGC CCAAACAAAA CCTTGTCAAA GAATTTTAGG GATCGTCCAA AACTATAAAA
  TTTAACTTCT GACAAAAGTA TAGCTTTTAA TATTTGACGA TTTGTGTTAA AACAAAAATT
  GACCTTCTTG GTTAGTAGCG GAGGGGAAAA ATCAATAGTA TAATTTTCAA TAATTCATAA
  AGCAAACGCC ATTATGCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320348114	CHEV_2_74528459	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246756172					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74520746 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11796	CpG island 11796	765 bp proximal
Cpgi11797	CpG island 11797	1939 bp proximal
Gm28309	predicted gene 28309	within coordinates
Gm74919	predicted gene, 74919	within coordinates
Hoxd10	homeobox D10	Intron
Igs15	intergenic site 15	within coordinates
Rr44605	regulatory region 44605	1255 bp proximal
Rr373365	regulatory region 373365	within coordinates
Rr559349	regulatory region 559349	1967 bp distal
Rr559350	regulatory region 559350	within coordinates
Rr559351	regulatory region 559351	537 bp proximal
Rr559352	regulatory region 559352	1362 bp proximal
Rr559353	regulatory region 559353	1683 bp proximal
Tssr18406	transcription start site region 18406	1458 bp upstream
Tssr18407	transcription start site region 18407	1483 bp upstream
Tssr18408	transcription start site region 18408	1511 bp upstream
Tssr18409	transcription start site region 18409	1539 bp upstream
Tssr18410	transcription start site region 18410	1563 bp upstream
Tssr18411	transcription start site region 18411	1649 bp upstream
Tssr24622	transcription start site region 24622	1356 bp downstream