rs246732933 SNP Detail

Summary

• ID
  rs246732933
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:114875254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCATGCTC AGGAGCAGGG
  GTAACTCCAC AAAGACCATC AGCAGGAAGT AGATGCTGCT CAGCAGGGAC CTGCAGGAAA
  CAAAGAAGGC AGGGAGTAAG CAACCACATG GCATAGAGGG CTCAGCCTTC CTGGTGCCCA
  TATCCTTGCC TTCAAGGCCA GATAAAGTCA AGCCTGAGAT GCTATTAGGT CTGCCTCCCT
  R
  CAAGTGCATG GCTGGTCATG CTGCCTGCAG GATAAGCTCT CTCACCCTGG AAAGCTTTAC
  CTGATATCCT TAATCCAGAC TGAAGGTGTC AGTGCTCCCT GACCTTTGTC CTTGGCCTCT
  GCTACATTCT TCACCAGGAT GACACCTCCT ACCTCATCAG TGTCCATGTG TTAGGAGCCT
  TGGGGCTCAC TCCAAACAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384818783	MGP_WTSI_11_114845742	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246732933					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384818783	MGP_WTSI_11_114845742	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:114875254 () rs orientation: forward

Symbol	Name	Function Class
Cd300ld	CD300 molecule like family member d	Intron
Tssr105828	transcription start site region 105828	1798 bp downstream
Tssr105829	transcription start site region 105829	1403 bp downstream
Tssr105830	transcription start site region 105830	1386 bp downstream
Tssr105831	transcription start site region 105831	605 bp downstream
Tssr105832	transcription start site region 105832	564 bp downstream
Tssr111689	transcription start site region 111689	1869 bp upstream
Tssr111690	transcription start site region 111690	1812 bp upstream
Tssr111691	transcription start site region 111691	1792 bp upstream
Tssr111692	transcription start site region 111692	1681 bp upstream
Tssr111693	transcription start site region 111693	1646 bp upstream
Tssr111694	transcription start site region 111694	1510 bp upstream
Tssr111695	transcription start site region 111695	1434 bp upstream
Tssr111696	transcription start site region 111696	1405 bp upstream
Tssr111697	transcription start site region 111697	1336 bp upstream
Tssr111698	transcription start site region 111698	1314 bp upstream
Tssr111699	transcription start site region 111699	1291 bp upstream
Tssr111700	transcription start site region 111700	1275 bp upstream
Tssr111701	transcription start site region 111701	1223 bp upstream
Tssr111702	transcription start site region 111702	1208 bp upstream
Tssr111703	transcription start site region 111703	1065 bp upstream
Tssr111704	transcription start site region 111704	834 bp upstream
Tssr111705	transcription start site region 111705	817 bp upstream
Tssr111706	transcription start site region 111706	493 bp upstream
Tssr111707	transcription start site region 111707	376 bp upstream
Tssr111708	transcription start site region 111708	161 bp upstream