rs246728673 SNP Detail

Summary

• ID
  rs246728673
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:62420248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTAAGTCAG CTCGAAATAG TGAGACAACT
  TTAAAAGGGC TCTCATCGAG CAGGTAGGTA GGCTGAGGCC CAGCCAGGAA CCAGACTGGT
  TCCGAAAGTC CTCTGGATGT CTCAGGACAA AAGTCATAGC GGGGCTGGGG CTCCGCTGCA
  K
  GACTGACTAC CCTAAAAGCA GCGGGACGCG AGACTGGAGC CTCCGGGGCC AAGTCCACTG
  CTGGCTGGCC TCCAGCGTCC CCAGCTCGAC TGCACGGATT CCCACGGTTT AGCACCCTCC
  ACCCAGCCCC GGGCCTCCGC ACCCACCTGG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321142487	CHEV_4_62163045	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246728673					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62420248 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14361	CpG island 14361			within coordinates
Hdhd3	haloacid dehalogenase-like hydrolase domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr593324	regulatory region 593324			789 bp distal
Rr593325	regulatory region 593325			within coordinates
Rr593326	regulatory region 593326			255 bp proximal
Tssr42008	transcription start site region 42008			165 bp downstream
Tssr42009	transcription start site region 42009			189 bp downstream
Tssr42010	transcription start site region 42010			222 bp downstream