rs246680707 SNP Detail

Summary

• ID
  rs246680707
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141303183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATGCATGT CCCCTCACAG
  GAGTCCCAAT GCACGTCACC ACTTTATCAG CTTCCCTTTA ATTAATTCAT ATATGTATAT
  ATTTATATAA TTTGGTGCTG GGGACAGAAG CCAGTCAAGT ACATACATGC TAAGTGTATT
  CAAATCACTG CGACACCCCC CACCCCCAGT TACCCATATA TTTAAAACGA AGCCTCATGA
  A
  GCTCTGGGTT CGATTCCTAG AATTCCAGAA TATAGGAGTT GGAGACAAGG GATATGAAGT
  CAAGGCAATC CAGGACGATA TAGTTAGTTC AAGGTCAGCC TGGGATACTC AGGACACTAT
  CTCACTGAAA CAAAACCCCC AAATAAAAAC AACCAACTCC CCCCACCCCA GACAAAAACA
  AGACACAAGG AAAGAACATA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321388166	CHEV_4_141131787	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246680707					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141303183 () rs orientation: forward

Symbol	Name	Function Class
Fblim1	filamin binding LIM protein 1	190 bp downstream
Gm68503	predicted gene, 68503	698 bp upstream
Rr377309	regulatory region 377309	1895 bp downstream
Rr603811	regulatory region 603811	1691 bp distal
Rr603812	regulatory region 603812	709 bp distal
Rr603813	regulatory region 603813	208 bp distal
Rr603814	regulatory region 603814	279 bp distal
Rr603815	regulatory region 603815	1187 bp proximal
Tssr44332	transcription start site region 44332	933 bp downstream