rs246668772 SNP Detail

Summary

• ID
  rs246668772
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109764017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTTTTTCC TCACCACCCA
  GGTGTCCATT TTCTCTTTGC CGCGACGTGC CTGCATCCTT TTCTGCCTTG GAATTATAAT
  CGAAACACTC GGTTCAGTCG TGAGAAACAT GTTTCATATA TGCAACGGGT GCTCCGATGT
  TTCTACGACT AGCCTTAGGA GCCTAGAGTA CGGTTTGGTG GTCAAAGTCA TGATGAGAAG
  Y
  AGAGGGTCTG AGGGGTCGGA GGGAAGGCAC GATGAACAAT ATTAGAGAGC ATTACTGGAG
  TTACCGAGGC TAGGCAGTCC GCTGGGTTAT GCACTACACC CAAGAAGTCT GCGCCGCCCC
  GTGGTGCCAG TGCGCAGCCG CAGTCCCGTA GCGGGACCGA GCGTTCCCAG CAGAGGGCAC
  TCACAGACAG GACATTCCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372700279	MGP_WTSI_7_117308324	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246668772					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372700279	MGP_WTSI_7_117308324	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109764017 () rs orientation: forward

Symbol	Name	Function Class
Gm72506	predicted gene, 72506	within coordinates
Gm72511	predicted gene, 72511	within coordinates
Rr1426	regulatory region 1426	within coordinates
Rr407345	regulatory region 407345	400 bp distal
Rr653199	regulatory region 653199	1524 bp distal
Rr653200	regulatory region 653200	1545 bp distal
Rr653201	regulatory region 653201	within coordinates
Rr653202	regulatory region 653202	490 bp distal
Rr653203	regulatory region 653203	108 bp proximal
Rr653204	regulatory region 653204	115 bp proximal
Rr653205	regulatory region 653205	163 bp proximal
Rr653206	regulatory region 653206	186 bp proximal
Rr653207	regulatory region 653207	1240 bp proximal
Rr653208	regulatory region 653208	1673 bp proximal
Tssr2367	transcription start site region 2367	71 bp downstream
Tssr2368	transcription start site region 2368	1416 bp downstream
Tssr68492	transcription start site region 68492	489 bp downstream
Tssr74253	transcription start site region 74253	58 bp downstream
Tssr74254	transcription start site region 74254	1542 bp downstream