rs246629999 SNP Detail

Summary

• ID
  rs246629999
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129998356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGAGGCT TTTTTAAATA
  AATAAATATA AATATATATA TATATATATA TATTTTTTCA GGAATGGGTT TTTTTTGTAC
  AGCCTTGGCT GTCCTAAAAG TAGCTCTTTA GACCAGGCTG GCCTCCAACT CACAGAGATC
  TGCCTGCCTC TGCCTCCCAA GTGCTGGGAT TAAAGGTGTG CACTACCACT GCCTGGCTGG
  M
  ATCAGGCTCT TACAATGTCC TGTTCTAGAC CATGAGAGTG GCACCTAGAA ACCTCTAATC
  ATTGTTTAAG CTTGAAGAGA CCAGCTAACT CCATCTTGTC TTCCTGACTT GTTCTGAGTC
  ATGCTCTCTG GCAGTTACTG TGGATTCCAG GAATTACAGG TCTGACTGAT AAACATCGTG
  GGTTTGTAGT CAAAACTATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321317091	CHEV_4_129781807	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246629999					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129998356 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	892 bp downstream
Rr600439	regulatory region 600439	1995 bp distal
Rr600440	regulatory region 600440	1496 bp distal
Rr600441	regulatory region 600441	722 bp distal
Rr600442	regulatory region 600442	within coordinates
Tssr39229	transcription start site region 39229	323 bp upstream