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rs246605011 SNP Detail
Summary
  • ID
    rs246605011
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:28076148 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGACGGAAAC ATCCCGTTCC
TGCCCGAGCT GGGTCAAGAG CCGGAGGGAC AGGACCAGAG CACCCCTTAC GCCAGAACTA
GCTCTCCTTG TTCCTACTGG GTGACCTCAT CTCGCCACGC CTCCTCAGGT GAACACCCGG
GCTGGTAACG TCACTTCCTG CCAGGTAAGC GCCCCCAGGC AGCACTGCTC ACGGAAAGGT
Y
TGGAGGTCAG TTTACCCACC ATCACAAGGC TGTGAGCCGC GAAAAAGACA AATTTCATCT
CAGTTCACAC TCAAGATTTT ATTTAAAAAT TCCAACCCCC CCCAAAAAAT AGACTTGTAC
GGTAGCAATA TATTAATATA TTATAGCATA TACTTAATAC AGTATCAGTT TTAACATTAC
AAAAAGAAAA ACGGAGTAGA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss370858506 MGP_WTSI_7_29161742 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246605011 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss370858506 MGP_WTSI_7_29161742 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:28076148 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm73785 predicted gene, 73785 49 bp upstream
Gm73803 predicted gene, 73803 1151 bp upstream
Rr380568 regulatory region 380568 within coordinates
Rr400209 regulatory region 400209 791 bp downstream
Rr644238 regulatory region 644238 661 bp distal
Rr644239 regulatory region 644239 within coordinates
Rr644240 regulatory region 644240 1210 bp proximal
Rr644241 regulatory region 644241 1767 bp proximal
Tssr65460 transcription start site region 65460 931 bp downstream
Tssr65461 transcription start site region 65461 160 bp downstream
Tssr65462 transcription start site region 65462 3 bp upstream
Tssr65463 transcription start site region 65463 763 bp upstream
Tssr65464 transcription start site region 65464 1273 bp upstream
Tssr71489 transcription start site region 71489 1139 bp upstream
Tssr71490 transcription start site region 71490 247 bp downstream
Tssr71491 transcription start site region 71491 351 bp downstream
Tssr71492 transcription start site region 71492 407 bp downstream
Tssr71493 transcription start site region 71493 451 bp downstream
Tssr71494 transcription start site region 71494 498 bp downstream
Tssr71495 transcription start site region 71495 543 bp downstream
Tssr71496 transcription start site region 71496 894 bp downstream
Tssr71497 transcription start site region 71497 1142 bp downstream
Tssr71498 transcription start site region 71498 1200 bp downstream
Tssr71499 transcription start site region 71499 1293 bp downstream
Tssr71500 transcription start site region 71500 1326 bp downstream
Tssr71501 transcription start site region 71501 1344 bp downstream
Tssr71502 transcription start site region 71502 1384 bp downstream
Tssr71503 transcription start site region 71503 1420 bp downstream
Tssr71504 transcription start site region 71504 1448 bp downstream
Tssr71505 transcription start site region 71505 1464 bp downstream
Tssr71506 transcription start site region 71506 1483 bp downstream
Tssr71507 transcription start site region 71507 1524 bp downstream
Tssr71508 transcription start site region 71508 1546 bp downstream
Tssr71509 transcription start site region 71509 1584 bp downstream
Tssr71510 transcription start site region 71510 1663 bp downstream
Tssr71511 transcription start site region 71511 1702 bp downstream
Tssr71512 transcription start site region 71512 1757 bp downstream
Zfp36 zinc finger protein 36 60 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
01/28/2026
MGI 6.24 		The Jackson Laboratory