rs246535698 SNP Detail

Summary

• ID
  rs246535698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:113510969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGTCCGA GGAAAGAGAC
  ACCAGCTAAA GGAGAAGGGA CATGCCAAGT GCCACCACAG GGTCCACAGT CTGAGACCTA
  AGTTAGGGAG GGACAGTGAT GGGGACGTCA CCGAAAAAGA AGGAAAGCAG ATTCTTCAGG
  GCTCTTTATC GCCCTGATGG GGAGGCAGCC CAAATTCGTC TGCGGTCAGG TCCCCCTCCC
  Y
  CCCCCCCCCC CCCACCCGCC GCCCTCAGGC AGAGAATCTG TCTAGATTGG AGAGAACCAG
  CTACTGAATG GTCAGGTCCC CAAGCGACTG TCAGCGCTCC TAGCTGCCCC TGGCACCTCA
  GTCCCCTCTG CGTTTCGAAG CTGGACATTG CAGGCACCGC AATCCACTCT CCCTCAGTCT
  GCCTAGAAAC GGTAAAGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323859192	CHEV_11_113481457	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246535698					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:113510969 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi4077	CpG island 4077			174 bp distal
Rr459386	regulatory region 459386			1824 bp distal
Rr459387	regulatory region 459387			1720 bp distal
Rr459388	regulatory region 459388			657 bp distal
Rr459389	regulatory region 459389			within coordinates
Slc39a11	solute carrier family 39 (metal ion transporter), member 11			Intron
				Noncoding-Transcript-Variant
Sstr2	somatostatin receptor 2			Intron
Tssr105751	transcription start site region 105751			797 bp downstream
Tssr105752	transcription start site region 105752			758 bp downstream