rs246517912 SNP Detail

Summary

• ID
  rs246517912
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32094997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGTGGGC CTTAAGTCGT
  TAGAAAGGAA GCTGAAGACC TCAGTGGACT GTGACACAGA AAGAAGTATA AATGCCAAGT
  TGTCACAGAT CTGAGGAACA GAAACCATAA CCAAGGCAAC TCTTTCTTTT TTTTCTCTCT
  CTTTTTTTGG TTTGGTTTTT CTGAGACAGG GTTTCTCTGT ATAGCCCTGG CTGTCCTGGA
  W
  CTCACTTTGT AGACCAGGCT GGGATTGAAC TCAGAAATCC ACCTGCCTCT GCCTCCCGAG
  TGCTGGGATT AAAGGCGTGT GCCACCACGC CTGGCCACAA GGCAACTCTT ATGACAATAT
  TTAATCAGGG CTGGCTTACA AATTGAGAGG TTCAATCCAT TATCAAGGTG CCAGAGCATG
  GCAACATCCA GGCAGGCATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395855789	MGP_WTSI_16_32276265	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246517912					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395855789	MGP_WTSI_16_32276265	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32094997 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8187	CpG island 8187	1142 bp proximal
Rnf168	ring finger protein 168	1280 bp upstream
Rr514673	regulatory region 514673	844 bp distal
Rr514674	regulatory region 514674	55 bp distal
Rr514675	regulatory region 514675	807 bp proximal
Smco1	single-pass membrane protein with coiled-coil domains 1	1398 bp downstream
Tssr137960	transcription start site region 137960	1270 bp upstream
Tssr137961	transcription start site region 137961	1300 bp upstream
Tssr137962	transcription start site region 137962	1349 bp upstream
Tssr137963	transcription start site region 137963	1469 bp upstream