rs246496811 SNP Detail

Summary

• ID
  rs246496811
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:100522203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGTGGAG GCTGCCGAGA
  CGCGAGCCCG GGTCTAACGT GGGGAGCCAC GCCAGGCCCG CATCGAATTA CCCCGGGGCC
  CAGCCGAGGG GGTTGCAAGA AGCTGCTTCT CCTCCCTTTG CAGCCCGCAG CTCAGGAAAT
  CGGAGAGGAG CGGGGGGTGG GGCGGGGCGG GGTGAGGTTG GGGTGTGTGT GGGGTGGGGA
  G
  GGTGGGGGGT TGAAAACAGC AAACCCCCAA ACAAAAGAGC TCCGGGTCCT CCTCCCCAGA
  AACAAAGCCC CGCCGCTGCG GGCGAGCCCC GGGGTGGGGC CGAGGGCGGG GGCGGCGGCG
  GGGAGGGGCT CGCTCAGCAG GCGCTAAGTC GCTTTATTGC CATAAAATGG GGCCCCGAGC
  CGCTCTGCCG GAGGATTAGG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
ss392224837	MGP_WTSI_14_100683986	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J
rs246496811					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392224837	MGP_WTSI_14_100683986	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:100522203 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm41231	predicted gene, 41231			707 bp upstream
Klf12	Kruppel-like transcription factor 12			Intron
				mRNA-UTR
Rr496738	regulatory region 496738			99 bp distal
Rr496739	regulatory region 496739			within coordinates
Rr496740	regulatory region 496740			1800 bp proximal
Tssr126898	transcription start site region 126898			410 bp upstream
Tssr130012	transcription start site region 130012			545 bp upstream
Tssr130013	transcription start site region 130013			269 bp upstream
Tssr130014	transcription start site region 130014			78 bp upstream
Tssr130015	transcription start site region 130015			39 bp upstream
Tssr130016	transcription start site region 130016			50 bp downstream
Tssr130017	transcription start site region 130017			89 bp downstream
Tssr130018	transcription start site region 130018			152 bp downstream
Tssr130019	transcription start site region 130019			180 bp downstream